Package: DSMolgenisArmadillo 2.0.10

Mariska Slofstra

DSMolgenisArmadillo: 'DataSHIELD' Client for 'MOLGENIS Armadillo'

'DataSHIELD' is an infrastructure and series of R packages that enables the remote and 'non-disclosive' analysis of sensitive research data. This package is the 'DataSHIELD' interface implementation to analyze data shared on a 'MOLGENIS Armadillo' server. 'MOLGENIS Armadillo' is a light-weight 'DataSHIELD' server using a file store and an 'RServe' server.

Authors:Mariska Slofstra [aut, cre], Sido Haakma [aut], Tommy de Boer [aut], Fleur Kelpin [aut], MOLGENIS org [cph, fnd]

# Install 'DSMolgenisArmadillo' in R:

install.packages('DSMolgenisArmadillo', repos = c('https://molgenis.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/molgenis/molgenis-r-datashield/issues

On CRAN:

hacktoberfest

6.55 score 49 scripts 523 downloads 24 exports 38 dependencies

Last updated 4 months agofrom:6280e7cdd6. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Nov 22 2024
R-4.5-win	OK	Nov 22 2024
R-4.5-linux	OK	Nov 22 2024
R-4.4-win	OK	Nov 22 2024
R-4.4-mac	OK	Nov 22 2024
R-4.3-win	OK	Nov 22 2024
R-4.3-mac	OK	Nov 22 2024

Exports:armadillo armadillo.get_token dsAggregate dsAssignExpr dsAssignResource dsAssignTable dsConnect dsDisconnect dsFetch dsGetInfo dsHasResource dsHasTable dsIsAsync dsIsCompleted dsKeepAlive dsListMethods dsListPackages dsListResources dsListSymbols dsListTables dsListWorkspaces dsRmSymbol dsRmWorkspace dsSaveWorkspace

Dependencies:askpass assertthat base64enc cli crayon curl dplyr DSI fansi generics glue hms httr httr2 jsonlite lifecycle magrittr mime MolgenisAuth openssl pillar pkgconfig prettyunits progress R6 rappdirs Rcpp rlang stringi stringr sys tibble tidyselect triebeard urltools utf8 vctrs withr

Analyse your data

Rendered fromDSMolgenisArmadillo.Rmdusingknitr::rmarkdownon Nov 22 2024.

Last update: 2023-10-27
Started: 2020-09-02

Develop DSMolgenisArmadillo

Rendered fromdevelopment.Rmdusingknitr::rmarkdownon Nov 22 2024.

Last update: 2023-10-27
Started: 2020-09-02

Using workspaces

Rendered fromworkspaces.Rmdusingknitr::rmarkdownon Nov 22 2024.

Last update: 2024-06-13
Started: 2020-09-08

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Create an Armadillo DataSHIELD Service driver	armadillo
Get ID Token	armadillo.get_token
Aggregate data	dsAggregate,ArmadilloConnection-method
Assign the result of an expression	dsAssignExpr,ArmadilloConnection-method
Assign a resource	dsAssignResource,ArmadilloConnection-method
Assign a table	dsAssignTable,ArmadilloConnection-method
Connect to an Armadillo DataSHIELD service	dsConnect,ArmadilloDriver-method
Disconnect from an Armadillo DataSHIELD Service	dsDisconnect,ArmadilloConnection-method
Fetch the result	dsFetch,ArmadilloResult-method
Get connection info	dsGetInfo,ArmadilloConnection-method
Get driver info	dsGetInfo,ArmadilloDriver-method
Get result info	dsGetInfo,ArmadilloResult-method
Verify resource exists.	dsHasResource,ArmadilloConnection-method
Verify table exist and can be accessible for performing DataSHIELD operations.	dsHasTable,ArmadilloConnection-method
Armadillo DataShield Service asynchronous support	dsIsAsync,ArmadilloConnection-method
Get whether the operation is completed	dsIsCompleted,ArmadilloResult-method
Keep a connection alive	dsKeepAlive,ArmadilloConnection-method
List methods	dsListMethods,ArmadilloConnection-method
List packages	dsListPackages,ArmadilloConnection-method
List Armadillo DataSHIELD Service resources	dsListResources,ArmadilloConnection-method
List R symbols	dsListSymbols,ArmadilloConnection-method
List Armadillo DataSHIELD Service tables	dsListTables,ArmadilloConnection-method
List workspaces	dsListWorkspaces,ArmadilloConnection-method
Remove an R symbol	dsRmSymbol,ArmadilloConnection-method
Remove a workspace	dsRmWorkspace,ArmadilloConnection-method
Save workspace	dsSaveWorkspace,ArmadilloConnection-method