Package: DSMolgenisArmadillo 4.0.2

Mariska Slofstra

DSMolgenisArmadillo: 'DataSHIELD' Client for 'MOLGENIS Armadillo'

'DataSHIELD' is an infrastructure and series of R packages that enables the remote and 'non-disclosive' analysis of sensitive research data. This package is the 'DataSHIELD' interface implementation to analyze data shared on a 'MOLGENIS Armadillo' server. 'MOLGENIS Armadillo' is a light-weight 'DataSHIELD' server using a file store and an 'RServe' server.

Authors:Mariska Slofstra [aut, cre], Sido Haakma [aut], Tommy de Boer [aut], Fleur Kelpin [aut], MOLGENIS org [cph, fnd]

DSMolgenisArmadillo_4.0.2.tar.gz
DSMolgenisArmadillo_4.0.2.zip(r-4.7)DSMolgenisArmadillo_4.0.2.zip(r-4.6)DSMolgenisArmadillo_4.0.2.zip(r-4.5)
DSMolgenisArmadillo_4.0.2.tgz(r-4.6-any)DSMolgenisArmadillo_4.0.2.tgz(r-4.5-any)
DSMolgenisArmadillo_4.0.2.tar.gz(r-4.7-any)DSMolgenisArmadillo_4.0.2.tar.gz(r-4.6-any)
DSMolgenisArmadillo_4.0.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
DSMolgenisArmadillo/json (API)

# Install 'DSMolgenisArmadillo' in R:
install.packages('DSMolgenisArmadillo', repos = c('https://molgenis.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/molgenis/molgenis-r-datashield/issues

Pkgdown/docs site:https://molgenis.github.io

On CRAN:

Conda:

hacktoberfest

7.28 score 1 packages 54 scripts 1.0k downloads 26 exports 37 dependencies

Last updated from:f75e3f2671. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK162
source / vignettesOK236
linux-release-x86_64OK165
macos-release-arm64OK87
macos-oldrel-arm64OK114
windows-develOK91
windows-releaseOK152
windows-oldrelOK113
wasm-releaseOK128

Exports:armadilloarmadillo.get_credentialsarmadillo.get_tokendsAggregatedsAssignExprdsAssignResourcedsAssignTabledsConnectdsDisconnectdsFetchdsGetInfodsHasResourcedsHasTabledsIsAsyncdsIsCompleteddsKeepAlivedsListMethodsdsListPackagesdsListResourcesdsListSymbolsdsListTablesdsListWorkspacesdsRestoreWorkspacedsRmSymboldsRmWorkspacedsSaveWorkspace

Dependencies:askpassassertthatbase64encclicrayoncurldplyrDSIgenericsgluehmshttrhttr2jsonlitelifecyclemagrittrmimeMolgenisAuthopensslpillarpkgconfigprettyunitsprogressR6rappdirsRcpprlangstringistringrsystibbletidyselecttriebeardurltoolsutf8vctrswithr

Analyse your data
Authenticate | Authenticate (legacy) | Assign data | Assign data using expressions | Assign data from tables | Assign data at login time | Subsetting data | Transform data | Save your work | Performing analysis | Simple statistical methods | Advanced statistical methods | Creating figures
Rendered fromDSMolgenisArmadillo.Rmdusingknitr::rmarkdown

Last update: 2025-07-18
Started: 2020-09-02

Using workspaces
Rendered fromworkspaces.Rmdusingknitr::rmarkdown

Last update: 2024-06-13
Started: 2020-09-08

Develop DSMolgenisArmadillo
Testing | Vignettes | Tips and tricks | Authentication | Version of the package | Table handling | Methods and packages | Available packages (serverside) | Available methods (clientside)
Rendered fromdevelopment.Rmdusingknitr::rmarkdown

Last update: 2023-10-27
Started: 2020-09-02

Readme and manuals

Help Manual

Help pageTopics
Create an Armadillo DataSHIELD Service driverarmadillo
Get credentials informationarmadillo.get_credentials
Aggregate datadsAggregate,ArmadilloConnection-method
Assign the result of an expressiondsAssignExpr,ArmadilloConnection-method
Assign a resourcedsAssignResource,ArmadilloConnection-method
Assign a tabledsAssignTable,ArmadilloConnection-method
Connect to an Armadillo DataSHIELD servicedsConnect,ArmadilloDriver-method
Disconnect from an Armadillo DataSHIELD ServicedsDisconnect,ArmadilloConnection-method
Fetch the resultdsFetch,ArmadilloResult-method
Get connection infodsGetInfo,ArmadilloConnection-method
Get driver infodsGetInfo,ArmadilloDriver-method
Get result infodsGetInfo,ArmadilloResult-method
Verify resource exists.dsHasResource,ArmadilloConnection-method
Verify table exist and can be accessible for performing DataSHIELD operations.dsHasTable,ArmadilloConnection-method
Armadillo DataShield Service asynchronous supportdsIsAsync,ArmadilloConnection-method
Get whether the operation is completeddsIsCompleted,ArmadilloResult-method
Keep a connection alivedsKeepAlive,ArmadilloConnection-method
List methodsdsListMethods,ArmadilloConnection-method
List packagesdsListPackages,ArmadilloConnection-method
List Armadillo DataSHIELD Service resourcesdsListResources,ArmadilloConnection-method
List R symbolsdsListSymbols,ArmadilloConnection-method
List Armadillo DataSHIELD Service tablesdsListTables,ArmadilloConnection-method
List workspacesdsListWorkspaces,ArmadilloConnection-method
Restore workspacedsRestoreWorkspace,ArmadilloConnection-method
Remove an R symboldsRmSymbol,ArmadilloConnection-method
Remove a workspacedsRmWorkspace,ArmadilloConnection-method
Save workspacedsSaveWorkspace,ArmadilloConnection-method