Package: MolgenisArmadillo 3.0.1

Mariska Slofstra

MolgenisArmadillo: Armadillo Client for the Armadillo Service

A set of functions to manage data shared on a 'MOLGENIS Armadillo' server.

Authors:Mariska Slofstra [aut, cre], Sido Haakma [aut], Tommy de Boer [aut], Fleur Kelpin [aut], Morris Swertz [aut], Tim Cadman [aut]

MolgenisArmadillo_3.0.1.tar.gz
MolgenisArmadillo_3.0.1.zip(r-4.7)MolgenisArmadillo_3.0.1.zip(r-4.6)MolgenisArmadillo_3.0.1.zip(r-4.5)
MolgenisArmadillo_3.0.1.tgz(r-4.6-any)MolgenisArmadillo_3.0.1.tgz(r-4.5-any)
MolgenisArmadillo_3.0.1.tar.gz(r-4.7-any)MolgenisArmadillo_3.0.1.tar.gz(r-4.6-any)
MolgenisArmadillo_3.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
MolgenisArmadillo/json (API)

# Install 'MolgenisArmadillo' in R:
install.packages('MolgenisArmadillo', repos = c('https://molgenis.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/molgenis/molgenis-r-armadillo/issues

Pkgdown/docs site:https://molgenis.github.io

On CRAN:

Conda:

hacktoberfest

7.19 score 3 stars 39 scripts 870 downloads 24 exports 50 dependencies

Last updated from:765dc212a3. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK161
source / vignettesOK203
linux-release-x86_64OK172
macos-release-arm64OK110
macos-oldrel-arm64OK136
windows-develOK101
windows-releaseOK110
windows-oldrelOK107
wasm-releaseOK134

Exports:armadillo.copy_resourcearmadillo.copy_tablearmadillo.create_projectarmadillo.delete_projectarmadillo.delete_project_folderarmadillo.delete_resourcearmadillo.delete_tablearmadillo.get_project_usersarmadillo.get_projects_infoarmadillo.get_tokenarmadillo.install_packagesarmadillo.list_projectsarmadillo.list_resourcesarmadillo.list_tablesarmadillo.load_resourcearmadillo.load_tablearmadillo.loginarmadillo.login_basicarmadillo.move_resourcearmadillo.move_tablearmadillo.subsetarmadillo.subset_definitionarmadillo.upload_resourcearmadillo.upload_table

Dependencies:arrowaskpassassertthatbase64encbitbit64clicliprcpp11crayoncurldata.tabledplyrgenericsgluehmshttrhttr2jsonlitelifecyclemagrittrmimeMolgenisAuthopensslpillarpkgconfigprettyunitsprogresspurrrR6rappdirsRcppreadrrlangrliststringistringrsystibbletidyrtidyselecttriebeardtzdburltoolsutf8vctrsvroomwithrXMLyaml

MolgenisArmadillo
Login | Structure | Projects | Folders | Tables | Sharing data | Looking at the data | Deleting the data
Rendered fromMolgenisArmadillo.Rmdusingknitr::rmarkdown

Last update: 2025-11-13
Started: 2020-07-15

Create resources
Datamanager | Researcher | Upload the data | Upload the resources (in Rstudio) | Install prerequisites
Rendered fromcreate_resources.Rmdusingknitr::rmarkdown

Last update: 2025-02-28
Started: 2022-03-25

Creating data subsets
Install and load the package | Logging in | Creating the subset | Specify the required variables in a separate .csv file. | Specifying the subset via arguments | Checking subsets
Rendered fromcreating_data_subsets.Rmdusingknitr::rmarkdown

Last update: 2024-05-24
Started: 2020-12-04

Install packages
Login | Whitelist packages
Rendered frominstall_packages.Rmdusingknitr::rmarkdown

Last update: 2023-10-13
Started: 2022-03-18

Readme and manuals

Help Manual

Help pageTopics
Copy resourcearmadillo.copy_resource
Copy tablearmadillo.copy_table
Create a project for a variable collectionarmadillo.create_project
Delete projectarmadillo.delete_project
Delete project folderarmadillo.delete_project_folder
Delete resourcearmadillo.delete_resource
Delete tablearmadillo.delete_table
Gets the users of an given project namearmadillo.get_project_users
Gets the Projects informationarmadillo.get_projects_info
Install packagearmadillo.install_packages
List the projectsarmadillo.list_projects
List the resources in a projectarmadillo.list_resources
List the tables in a projectarmadillo.list_tables
Load a resource from a projectarmadillo.load_resource
Load a table from a projectarmadillo.load_table
Loginarmadillo.login
Login with username / password (meant for dev and test environments)armadillo.login_basic
Move the resourcearmadillo.move_resource
Move the tablearmadillo.move_table
Describes data available to subset and makes subsetarmadillo.subset
Builds an R object containing info required to make subsetsarmadillo.subset_definition
Uploads a resource to a folder in a projectarmadillo.upload_resource
Uploads a table to a folder in a projectarmadillo.upload_table