Package: MolgenisArmadillo 2.7.0

Mariska Slofstra

MolgenisArmadillo: Armadillo Client for the Armadillo Service

A set of functions to manage data shared on a 'MOLGENIS Armadillo' server.

Authors:Mariska Slofstra [aut, cre], Sido Haakma [aut], Tommy de Boer [aut], Fleur Kelpin [aut], Morris Swertz [aut], Tim Cadman [aut]

MolgenisArmadillo_2.7.0.tar.gz
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MolgenisArmadillo.pdf |MolgenisArmadillo.html✨
MolgenisArmadillo/json (API)
NEWS

# Install 'MolgenisArmadillo' in R:
install.packages('MolgenisArmadillo', repos = c('https://molgenis.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/molgenis/molgenis-r-armadillo/issues

On CRAN:

hacktoberfest

7.61 score 3 stars 33 scripts 603 downloads 25 exports 51 dependencies

Last updated 1 months agofrom:3b29906ca3. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 13 2024
R-4.5-winOKNov 13 2024
R-4.5-linuxOKNov 13 2024
R-4.4-winOKNov 13 2024
R-4.4-macOKNov 13 2024
R-4.3-winOKNov 13 2024
R-4.3-macOKNov 13 2024

Exports:.format_api_postsarmadillo.copy_resourcearmadillo.copy_tablearmadillo.create_projectarmadillo.delete_projectarmadillo.delete_project_folderarmadillo.delete_resourcearmadillo.delete_tablearmadillo.get_project_usersarmadillo.get_projects_infoarmadillo.get_tokenarmadillo.install_packagesarmadillo.list_projectsarmadillo.list_resourcesarmadillo.list_tablesarmadillo.load_resourcearmadillo.load_tablearmadillo.loginarmadillo.login_basicarmadillo.move_resourcearmadillo.move_tablearmadillo.subsetarmadillo.subset_definitionarmadillo.upload_resourcearmadillo.upload_table

Dependencies:arrowaskpassassertthatbase64encbitbit64clicliprcpp11crayoncurldata.tabledplyrfansigenericsgluehmshttrhttr2jsonlitelifecyclemagrittrmimeMolgenisAuthopensslpillarpkgconfigprettyunitsprogresspurrrR6rappdirsRcppreadrrlangrliststringistringrsystibbletidyrtidyselecttriebeardtzdburltoolsutf8vctrsvroomwithrXMLyaml

Create resources

Rendered fromcreate_resources.Rmdusingknitr::rmarkdownon Nov 13 2024.

Last update: 2023-12-15
Started: 2022-03-25

Creating data subsets

Rendered fromcreating_data_subsets.Rmdusingknitr::rmarkdownon Nov 13 2024.

Last update: 2024-05-24
Started: 2020-12-04

Install packages

Rendered frominstall_packages.Rmdusingknitr::rmarkdownon Nov 13 2024.

Last update: 2023-10-13
Started: 2022-03-18

MolgenisArmadillo

Rendered fromMolgenisArmadillo.Rmdusingknitr::rmarkdownon Nov 13 2024.

Last update: 2023-12-15
Started: 2020-07-15

Readme and manuals

Help Manual

Help pageTopics
Add a Slash to a URL if Missing.add_slash_if_missing
Helper function for compressing to an RDS file.compress_resource
Helper function for compressing to a parquet file.compress_table
Formats API posts based on subset definition.format_api_posts
Helper function to get the contents of a linkfile.get_linkfile_content
Helper function to extract the source parquet file in a linkfile.load_linked_table
Helper function to extract an RDS file.load_resource
Helper function to extract a parquet file.load_table
Copy resourcearmadillo.copy_resource
Copy tablearmadillo.copy_table
Create a project for a variable collectionarmadillo.create_project
Delete projectarmadillo.delete_project
Delete project folderarmadillo.delete_project_folder
Delete resourcearmadillo.delete_resource
Delete tablearmadillo.delete_table
Gets the users of an given project namearmadillo.get_project_users
Gets the Projects informationarmadillo.get_projects_info
Install packagearmadillo.install_packages
List the projectsarmadillo.list_projects
List the resources in a projectarmadillo.list_resources
List the tables in a projectarmadillo.list_tables
Load a resource from a projectarmadillo.load_resource
Load a table from a projectarmadillo.load_table
Loginarmadillo.login
Login with username / password (meant for dev and test environments)armadillo.login_basic
Move the resourcearmadillo.move_resource
Move the tablearmadillo.move_table
Describes data available to subset and makes subsetarmadillo.subset
Builds an R object containing info required to make subsetsarmadillo.subset_definition
Uploads a resource to a folder in a projectarmadillo.upload_resource
Uploads a table to a folder in a projectarmadillo.upload_table